Issues

• Fix CI on master

  Task

  NeuroML/pyNeuroML#476 · Filter by author sanjayankur31 opened on Jun 2, 2026
  

• RO-Crate support

  T: enhancement
  Feature

  NeuroML/pyNeuroML#472 · Filter by author sanjayankur31 opened on May 20, 2026

• New utility: nml2zarr: convert simulation data into zarr format

  T: enhancement
  Feature

  NeuroML/pyNeuroML#471 · Filter by author sanjayankur31 opened on May 20, 2026

• Incorrect 'max_memory' Docstring Type in runners.py

  NeuroML/pyNeuroML#462 · Filter by author dhiraj-143r opened on Feb 8, 2026

• [Bug] Unreachable code branch

  S: needs info
  NeuroML/pyNeuroML#460 · Filter by author dhiraj-143r opened on Jan 30, 2026
  4

• pynml-modchananalysis: investigate setting of minimum stepV

  Help wantedT: enhancement
  NeuroML/pyNeuroML#454 · Filter by author sanjayankur31 opened on Jul 4, 2025
  1

• pynml-plotmorph -interactive (vispy) seems broken with numpy 2.3.1

  T: bug
  Bug

  NeuroML/pyNeuroML#452 · Filter by author sanjayankur31 opened on Jun 25, 2025
  4

  

• Refactor mesh generation to decouple it from vispy code

  P: lowT: enhancement
  Task

  NeuroML/pyNeuroML#447 · Filter by author sanjayankur31 opened on Jun 3, 2025

• Add utility function to enumerate all model parameters

  good first issueHelp wantedT: enhancement
  NeuroML/pyNeuroML#433 · Filter by author sanjayankur31 opened on Oct 24, 2024
  4

  

• Add functionality to overlay data on to 3D visualisations

  T: enhancement
  NeuroML/pyNeuroML#426 · Filter by author sanjayankur31 opened on Sep 12, 2024
  6

• Tracking: multiple 3D vispy based visualisations do not work in a single jupyter notebook

  T: bug
  NeuroML/pyNeuroML#422 · Filter by author sanjayankur31 opened on Sep 5, 2024

• Make getting model file list SBML aware

  T: enhancement
  NeuroML/pyNeuroML#372 · Filter by author sanjayankur31 opened on May 29, 2024

• Implement exporting to Neuroglancer formats

  T: enhancement
  NeuroML/pyNeuroML#369 · Filter by author sanjayankur31 opened on May 22, 2024
  1

• [Bug] pynml-plotmorph: vispy: no mouse events

  T: bug
  NeuroML/pyNeuroML#358 · Filter by author Sietse20 opened on May 13, 2024
  3

  

• Add analysis of KineticState channels to pynml-channelanalysis

  T: enhancement
  NeuroML/pyNeuroML#357 · Filter by author sanjayankur31 opened on May 8, 2024

• Extend pynml to include a -biosimulations flag to submit simulations

  T: enhancement
  NeuroML/pyNeuroML#347 · Filter by author sanjayankur31 opened on Apr 23, 2024

• [Bug] ExportSWC: exceptions are wrong

  T: bug
  NeuroML/pyNeuroML#330 · Filter by author sanjayankur31 opened on Apr 9, 2024
  2

• Add utility function to create SpikeArray from file

  good first issueT: enhancement
  NeuroML/pyNeuroML#328 · Filter by author sanjayankur31 opened on Apr 9, 2024
  2

• [cell analysis] Implement morphological statistics for NeuroML cell models

  good first issueHelp wantedT: enhancement
  NeuroML/pyNeuroML#319 · Filter by author sanjayankur31 opened on Mar 13, 2024
  2

• [vispy viewer] investigate if we can record a video of the rotating image

  good first issueHelp wantedT: enhancement
  NeuroML/pyNeuroML#318 · Filter by author sanjayankur31 opened on Mar 13, 2024
  2

• Add warnings about missing files of model during visualisation

  T: enhancement
  NeuroML/pyNeuroML#315 · Filter by author lej0hn opened on Mar 8, 2024
  1

• Ascertain and set NEURON_HOME if the environment variable is not set

  good first issueHelp wantedT: enhancement
  NeuroML/pyNeuroML#308 · Filter by author sanjayankur31 opened on Mar 1, 2024
  5

  

• archiving/nsg: include HDF5 exports

  T: enhancement
  NeuroML/pyNeuroML#285 · Filter by author sanjayankur31 opened on Dec 6, 2023
  2

• Add tests running simple neuron + netpyne sims on nsg

  good first issueT: enhancement
  NeuroML/pyNeuroML#268 · Filter by author sanjayankur31 opened on Nov 2, 2023
  1

  

• Add function to generate LFP plots

  Help wantedP: lowT: enhancement
  NeuroML/pyNeuroML#241 · Filter by author sanjayankur31 opened on Jul 15, 2023
  2