Consolidate Classic into Ledger and protect drafts and local APIs by Coding-Dev-Tools · Pull Request #262 · Coding-Dev-Tools/engraphis

Coding-Dev-Tools · 2026-10-12T04:00:46Z

Consolidates Classic capabilities into Ledger, redirects /classic, protects hidden drafts across refreshes and workspace changes, and enforces complete browser origins for token-free local APIs. Timeline filtering precedes limits and follows world/system time. This PR follows #261 and includes the verified #260/#261 fixes.

Community legend names and colors now remain stable when filtering changes their visible rank. Relation pagination focuses the first newly revealed row, including the final partial page. Existing draft, scope, temporal, CSP and origin review safeguards remain covered.

Validation: 95 focused graph, polling, spec API, evidence, MCP and skill tests; 13 documentation/distribution tests; the new relation-pagination Chromium regression; Ruff. Fresh immutable evidence, SVG/PNG provenance and README source links match this branch. Remote CI validates the complete matrix at the pushed head.

--- updated-dependencies: - dependency-name: openai-codex dependency-version: 0.160.1 dependency-type: direct:development update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com>

Bumps [tree-sitter-language-pack](https://github.com/xberg-io/tree-sitter-language-pack) from 1.20.0 to 1.21.0. - [Release notes](https://github.com/xberg-io/tree-sitter-language-pack/releases) - [Changelog](https://github.com/xberg-io/tree-sitter-language-pack/blob/main/CHANGELOG.md) - [Commits](xberg-io/tree-sitter-language-pack@v1.20.0...v1.21.0) --- updated-dependencies: - dependency-name: tree-sitter-language-pack dependency-version: 1.21.0 dependency-type: direct:development update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com>

Bumps [anchore/sbom-action](https://github.com/anchore/sbom-action) from 0.24.2 to 0.24.3. - [Release notes](https://github.com/anchore/sbom-action/releases) - [Changelog](https://github.com/anchore/sbom-action/blob/main/RELEASE.md) - [Commits](anchore/sbom-action@3ad7283...66cbf4b) --- updated-dependencies: - dependency-name: anchore/sbom-action dependency-version: 0.24.3 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com>

The dashboard now has one interface. Each capability Classic had was rebuilt into the Ledger view where people look for it, then Classic was removed: - Library: Markdown rendering (DOM-only renderer, never parses HTML) with a Write/Preview editor, unsaved-changes guard and Ctrl/Cmd+S; word-level history diffs; per-memory audit trail; drag and Alt+Arrow ordering; one Import menu (Quick import of files, folders or a server path, document import, code indexing and PostgreSQL schema import). - Ask: per-result retrieval scores. Home: memory health and the selected project's last-session handoff (GET /api/proactive gains `repo`). - Explore: colour by cluster, type or connections, palettes, editable type colours, a legend, an entity and relation explorer, keyboard navigation. - Activity: bi-temporal Timeline cards with a superseded-only filter (replacing the Supersessions tab), receipt-chain status, packed-context accounting. - Settings: workspace Describe, Copy, Merge, Export and Delete; plan status and plan-aware hosted messages; automation run status and proposals. - Everywhere: connection and semantic-search banners, an accessible in-page dialog instead of native confirm/prompt, Solarized and Sepia themes. Removed: engraphis/classic_assets, the duplicate engraphis/static tree, the dashboard switcher, the graph compat adapter, and the Marked and DOMPurify copies. /classic redirects to /. Shipped dashboard assets drop from 3.51 MB in three trees to 1.85 MB in one. Hardening found on the way: the zero-config API refuses requests a browser marks as cross-site unless they passed a CORS preflight; the Markdown renderer is linear on adversarial input; dialogs drop bidi controls; secure erase sends its required confirmation; a stalled graph download no longer blocks Reload; the CSP release gate covers Ledger and every first-party script. Tests, docs, packaging and the public offline evidence artifact are updated to match (fixture results unchanged). Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_01QRXYjdLRbDr9oEUU4qdZ2m

Without ENGRAPHIS_API_TOKEN the dashboard trusts loopback peers. A website that points its own name at 127.0.0.1 (DNS rebinding) becomes same-origin with that name, so its requests came from a loopback peer, passed every Origin check and could read or write the whole /api surface. - The zero-config gate now also checks Host: it accepts exactly `localhost`, IP literals (an address cannot be rebound), the bind host, the ENGRAPHIS_DASHBOARD_URL host and the new ENGRAPHIS_ALLOWED_HOSTS names. `localhost.` and `*.localhost` are refused because some resolvers send them to DNS. Token mode is unchanged. - The check covers the `/dashboard/review` routes as well as `/api`; `/mcp` keeps the SDK's own Host allow-list. - The read-only graph server (engraphis-graph-server) applies the same check when it runs without a token. - The cross-site guard no longer lets a header vouch for another site's page: with ENGRAPHIS_CORS_ORIGINS=* any page could pass the preflight and send the dashboard's header. - Ledger shows the server's reason when a request is refused instead of reporting the server as unreachable. The helpers live in engraphis/netutil.py and are unit-tested; the public offline evidence artifact is re-exported for the new sources (fixture results unchanged). Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_01QRXYjdLRbDr9oEUU4qdZ2m

chatgpt-codex-connector · 2026-10-12T04:00:54Z

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…61013

…l batching

…g reveal

…61013

# Conflicts: # package.json

* fix(deps-dev): bump openai-codex from 0.159.0 to 0.160.1 --- updated-dependencies: - dependency-name: openai-codex dependency-version: 0.160.1 dependency-type: direct:development update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> * fix: address verified release audit findings Validated local candidate: f9dabd9d69d779210ce83e919b410b1770505e43 - f9dabd9d69d779210ce83e919b410b1770505e43 fix(packaging): align MCP install paths with the patched SDK floor - 24afc26e882c0f3fa5eab4b6e2b5294fe73bd4c6 fix(deps): require the patched MCP 1.30 transport --------- Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Jaixii <algorithmictradingsolutions@gmail.com>

…258) * fix(deps-dev): bump tree-sitter-language-pack from 1.20.0 to 1.21.0 Bumps [tree-sitter-language-pack](https://github.com/xberg-io/tree-sitter-language-pack) from 1.20.0 to 1.21.0. - [Release notes](https://github.com/xberg-io/tree-sitter-language-pack/releases) - [Changelog](https://github.com/xberg-io/tree-sitter-language-pack/blob/main/CHANGELOG.md) - [Commits](xberg-io/tree-sitter-language-pack@v1.20.0...v1.21.0) --- updated-dependencies: - dependency-name: tree-sitter-language-pack dependency-version: 1.21.0 dependency-type: direct:development update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> * Keep new benchmark campaigns on the updated tree-sitter grammars * fix: address verified release audit findings Validated local candidate: e142e3158e06c92c00253266120496d33d111a92 - e142e3158e06c92c00253266120496d33d111a92 fix(packaging): align MCP install paths with the patched SDK floor - e5631206443c0d069d3e9114bccb87111b89d602 fix(deps): require the patched MCP 1.30 transport --------- Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Jaixii <algorithmictradingsolutions@gmail.com>

* fix(deps): bump anchore/sbom-action from 0.24.2 to 0.24.3 Bumps [anchore/sbom-action](https://github.com/anchore/sbom-action) from 0.24.2 to 0.24.3. - [Release notes](https://github.com/anchore/sbom-action/releases) - [Changelog](https://github.com/anchore/sbom-action/blob/main/RELEASE.md) - [Commits](anchore/sbom-action@3ad7283...66cbf4b) --- updated-dependencies: - dependency-name: anchore/sbom-action dependency-version: 0.24.3 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> * test(release): validate immutable SBOM action pins across upgrades * fix: address verified release audit findings Validated local candidate: 0e9f6f2599167a5f235b298d39c87182356156f5 - 0e9f6f2599167a5f235b298d39c87182356156f5 fix(packaging): align MCP install paths with the patched SDK floor - 3207cfa5af1c7309407b8d63f9ca304113dfcd66 fix(deps): require the patched MCP 1.30 transport --------- Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Coding-Dev-Tools <algorithmictradingsolutions@gmail.com>

….22,<0.18 (#264) * fix(deps-dev): update ruff requirement Updates the requirements on [ruff](https://github.com/astral-sh/ruff) to permit the latest version. - [Release notes](https://github.com/astral-sh/ruff/releases) - [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md) - [Commits](astral-sh/ruff@0.15.22...0.17.0) --- updated-dependencies: - dependency-name: ruff dependency-version: 0.17.0 dependency-type: direct:development ... Signed-off-by: dependabot[bot] <support@github.com> * test(release): align ruff version bound assertion with <0.18 --------- Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Jaixii <algorithmictradingsolutions@gmail.com>

Bumps [@playwright/test](https://github.com/microsoft/playwright) from 1.63.0 to 1.64.0. - [Release notes](https://github.com/microsoft/playwright/releases) - [Commits](microsoft/playwright@v1.63.0...v1.64.0) --- updated-dependencies: - dependency-name: "@playwright/test" dependency-version: 1.64.0 dependency-type: direct:development update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

Bumps the codeql-action group with 3 updates: [github/codeql-action/init](https://github.com/github/codeql-action), [github/codeql-action/analyze](https://github.com/github/codeql-action) and [github/codeql-action/upload-sarif](https://github.com/github/codeql-action). Updates `github/codeql-action/init` from 4.38.2 to 4.38.3 - [Release notes](https://github.com/github/codeql-action/releases) - [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md) - [Commits](github/codeql-action@2892aa5...24c5418) Updates `github/codeql-action/analyze` from 4.38.2 to 4.38.3 - [Release notes](https://github.com/github/codeql-action/releases) - [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md) - [Commits](github/codeql-action@2892aa5...24c5418) Updates `github/codeql-action/upload-sarif` from 4.38.2 to 4.38.3 - [Release notes](https://github.com/github/codeql-action/releases) - [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md) - [Commits](github/codeql-action@2892aa5...24c5418) --- updated-dependencies: - dependency-name: github/codeql-action/init dependency-version: 4.38.3 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: codeql-action - dependency-name: github/codeql-action/analyze dependency-version: 4.38.3 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: codeql-action - dependency-name: github/codeql-action/upload-sarif dependency-version: 4.38.3 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: codeql-action ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

Bumps [actions/download-artifact](https://github.com/actions/download-artifact) from 8.0.1 to 8.0.2. - [Release notes](https://github.com/actions/download-artifact/releases) - [Commits](actions/download-artifact@3e5f45b...9000827) --- updated-dependencies: - dependency-name: actions/download-artifact dependency-version: 8.0.2 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

Bumps [impeccable](https://github.com/pbakaus/impeccable) from 4.1.0 to 4.5.2. - [Release notes](https://github.com/pbakaus/impeccable/releases) - [Changelog](https://github.com/pbakaus/impeccable/blob/main/docs/RELEASE-4.4.0.md) - [Commits](pbakaus/impeccable@cli-v4.1.0...cli-v4.5.2) --- updated-dependencies: - dependency-name: impeccable dependency-version: 4.5.2 dependency-type: direct:development update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Jaixii <algorithmictradingsolutions@gmail.com>

…engraphis-final-stack-20261017

chatgpt-codex-connector

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chatgpt-codex-connector · 2026-10-17T14:29:12Z

+    if connect is None:
+        from engraphis.backends.encrypted_db import connector_from_env
+
+        connect = connector_from_env()


Close factory-created encryption connectors

When ENGRAPHIS_DB_KEY or ENGRAPHIS_DB_KEY_FILE is set and a caller uses the public engine factory directly, this branch creates an _EncryptedConnector, but the engine later adopts only the store and backend resources. Store.close() deliberately does not close injected connectors, so engine.close() leaves the connector's key-bearing _pragma resident as long as the closed engine/store is referenced; construction failures after opening the store leak it similarly. Track whether the factory created the connector and close it after the store, without taking ownership of caller-supplied connectors.

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chatgpt-codex-connector · 2026-10-17T14:29:12Z

@@ -1893,7 +1898,9 @@ def timeline(q: str = Query(..., min_length=1, max_length=10_000),
                raise _invalid_request() from None
            logger.error("dashboard timeline failed (%s)", type(exc).__name__)
            raise HTTPException(status_code=500, detail={"error": "internal server error"})
-        mems = _keyword_search(ws, q, limit)
+        mems = _keyword_search(ws, q, limit, include_invalid=True, closed_only=closed_only)


Reject unmatchable short timeline queries

When semantic retrieval falls back because of an embedder mismatch, a request such as closed_only=true&q=AI reaches _keyword_search(), whose predicate ignores every term of two characters or fewer. With no usable terms it applies no keyword condition at all, so this new closed-history path returns arbitrary superseded memories from the workspace as though they matched the topic. Match short terms safely or return no results when the query produces no lexical terms.

AGENTS.md reference: AGENTS.md:L175-L177

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chatgpt-codex-connector · 2026-10-17T14:29:12Z

+      }
+    }
+    state.graphTypeColors = { ...state.graphTypeColors, [type]: color.toLowerCase() };
+    if (state.graphEngine) state.graphEngine.setTypeColor(type, color.toLowerCase());


Use the Every-renderer API for entity colors

In Every node mode, changing an entity-type color calls setTypeColor(), but that renderer exposes only the plural setTypeColors() API. The event handler therefore throws a TypeError; the selected color is not applied and the subsequent legend refresh and preference persistence are skipped. Use the shared bulk API here or add the singular method to the Every renderer.

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chatgpt-codex-connector · 2026-10-17T14:29:12Z

+
+    function picked(input) {
+      const items = [...(input.files || [])].map(file => ({
+        file, name: file.webkitRelativePath || file.name,


Handle long relative paths per file during folder imports

When a selected folder contains one file whose ordinary relative path exceeds 200 characters, passing the full webkitRelativePath causes MemoryService.import_files() to reject that name before entering its per-file error handling. The resulting ValidationError aborts the entire Quick import instead of importing the remaining valid files and reporting the long path as skipped. Validate and report this case client-side, use a path-sized server bound, or move the validation into the per-file failure path.

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dependabot Bot and others added 6 commits October 9, 2026 19:29

fix(deps-dev): bump openai-codex from 0.159.0 to 0.160.1

48f7317

--- updated-dependencies: - dependency-name: openai-codex dependency-version: 0.160.1 dependency-type: direct:development update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com>

test(release): validate immutable SBOM action pins across upgrades

a4df780

Coding-Dev-Tools added 2 commits October 12, 2026 09:57

Reconcile the Claude Ledger work with Spec Studio and dashboard fixes

4d982f9

Bind the desktop integration evidence to its committed source

679dcbb

Coding-Dev-Tools changed the base branch from main to codex/dashboard-local-audit-20261011 October 12, 2026 13:59

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Coding-Dev-Tools added 2 commits October 12, 2026 10:11

Carry the reviewed graph cancellation fix into the desktop stack

26bb401

Preserve editor drafts across workspace metadata updates

22ce45e

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Comment thread engraphis/dashboard_assets/ledger.js Outdated

Confirm active workspace renames and preserve chained dialogs

a1af2b2

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Comment thread engraphis/dashboard_assets/ledger.js Outdated

Keep graph explorer navigation within the visible scope

f1f85a4

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Comment thread engraphis/dashboard_assets/ledger.js Outdated

Preserve drafts across workspace mutations and maintenance refreshes

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Comment thread engraphis/dashboard_assets/ledger.js Outdated

Coding-Dev-Tools added 2 commits October 12, 2026 12:16

Filter superseded timeline history before result limits

880e0f6

Pin benchmark links to the timeline filtering source

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Comment thread engraphis/dashboard_assets/engraphis-graph.js Outdated

Coding-Dev-Tools added 2 commits October 12, 2026 12:47

Respect watchdog timeouts and keep graph legends within scope

b3d541b

Pin benchmark documentation to watchdog and legend repairs

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Comment thread engraphis/dashboard_app.py Outdated

Comment thread engraphis/routes/v2_api.py

Coding-Dev-Tools added 2 commits October 12, 2026 13:09

Validate complete browser origins and order fallback timelines

96b25e0

Pin benchmark documentation to complete-origin validation

f07db1f

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Comment thread engraphis/core/store.py Outdated

Keep scheduled future expiry out of superseded timelines

3eeb5b5

Coding-Dev-Tools and others added 28 commits October 16, 2026 22:32

Merge branch 'codex/dashboard-local-audit-20261011' into ui/ledger-only

380637e

Merge branch 'ui/ledger-only' into codex/engraphis-local-followup-202…

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perf(core): wire factory DB encryption and batch recall reinforcement

ec63587

docs(evidence): bind offline fixtures to factory encryption and recal…

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…l batching

docs(readme): pin chart to verified evidence commit

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test(e2e): align Explore keyboard cursor assertions with non-isolatin…

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…g reveal

Merge branch 'ui/ledger-only' into codex/engraphis-local-followup-202…

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…61013

test(imports): use write_bytes for Python 3.9 compatibility

d243492

Merge validated Codex dependency update for release integration

9b9ae3b

Merge validated parser dependency update for release integration

488c700

Merge validated SBOM action update for release integration

94f7cb9

Merge verified Ruff release series update

2630c47

Merge Playwright test dependency update

ceeeab7

Merge design tooling dependency update

21c031c

# Conflicts: # package.json

Merge pinned CodeQL action update

4895fef

Merge pinned artifact download action update

03d7009

style(tests): trim inherited encryption fixture trailing blank line

59eff93

test: scope private-ledger monkeypatches before fixture cleanup

8d2389c

Merge commit '8d2389cc08ce525f69a1fae04bab33f7f2c2d7d5' into release-…

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…engraphis-final-stack-20261017

Merge commit 'a4638ad0331a87538354d2bef6ec110e38775a24' into release-…

fa692a5

…engraphis-final-stack-20261017

Coding-Dev-Tools merged commit fa692a5 into codex/dashboard-local-audit-20261011 Oct 17, 2026
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Coding-Dev-Tools commented Oct 12, 2026 •

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