Engreitz Lab

Utilities and reusable scripts for CRISPR screen analysis, preprocessing, and downstream workflows.

Computaional pipeline for single-cell perturbation data

Reproducible analysis code for endothelial differentiation 10x Multiome CMO experiments across timepoints

Workflow for analyzing DC TAP datasets

Analysis for Swap-seq experiments

Pipeline to run scE2G

“Power and sample-size analysis for detecting element–gene links (SCEPTRE-based); estimates per-pair power and expected discoveries at a target FDR.”

Enhancer-Gene Prediction Pipeline based on logistic regression and ABC model