Issues

• DOC: Kilosort 2.5/3 rezToPhy writes a scaled identity as whitening_mat.npy (KS2.0 wrote the real Wrot)

  MouseLand/Kilosort#1047 · Filter by author cindykrafft opened on Sep 1, 2026

• BUG (KS2/2.5/3): get_whitening_matrix normalizes covariance by ceil((Nbatch-1)/nSkipCov) but accumulates floor(..)+1 batches

  MouseLand/Kilosort#1046 · Filter by author cindykrafft opened on Sep 1, 2026

• BUG: clusters with <=10 spikes export ContamPct = 0.0, the best possible score

  MouseLand/Kilosort#1044 · Filter by author cindykrafft opened on Sep 1, 2026

• BUG: Left settings panel gets clipped and controls become inaccessible unless window is fullscreen

  MouseLand/Kilosort#1041 · Filter by author NileshArnaiya opened on Jul 31, 2026

• Feature request: Controls and Help buttons open external docs instead of showing help in the GUI

  MouseLand/Kilosort#1040 · Filter by author NileshArnaiya opened on Jul 31, 2026
  1

• BUG: make_pc_features can associate PC features with the wrong channel IDs when multiple final clusters share a detection template

  MouseLand/Kilosort#1039 · Filter by author gwfolk opened on Jul 26, 2026
  1

• FEATURE: Implementation of KS2.5 Prediction and Residual plots

  enhancement
  MouseLand/Kilosort#971 · Filter by author dprotter opened on Aug 8, 2025
  1

• FEATURE: Saving variables to disk between major steps

  MouseLand/Kilosort#960 · Filter by author AnanMtau opened on Jul 9, 2025
  1

• BUG: cluster_templates function returns vastly different waveforms from the one in `templates.npy

  MouseLand/Kilosort#894 · Filter by author teristam opened on Mar 14, 2025
  5

• FEATURE: <Use spike templates from one sorting run on all subsequent runs>

  MouseLand/Kilosort#860 · Filter by author mikemanookin opened on Feb 1, 2025
  9

  

• Update installation files to newer format

  enhancement
  MouseLand/Kilosort#793 · Filter by author jacobpennington opened on Oct 2, 2024
  

• Drift Correction issues with multi-shank probe

  MouseLand/Kilosort#686 · Filter by author Selmaan opened on May 7, 2024
  27

  

• FEATURE: Add more documentation to source code for spike sorting steps

  docstodo
  MouseLand/Kilosort#648 · Filter by author jacobpennington opened on Mar 29, 2024
  

• FEATURE: DIY guide to improve the results of Kilosort

  docsenhancement
  MouseLand/Kilosort#642 · Filter by author marius10p opened on Mar 27, 2024