Issues

• Modernize storage and access of model species names, indices, and types

  Feature

  MunskyGroup/SSIT#59 · Filter by author dmitrisvetlov opened on Aug 29, 2026

• Bug in MEXPV when called already at steady state

  bug
  Bug

  MunskyGroup/SSIT#54 · Filter by author dmitrisvetlov opened on Aug 21, 2026
  

• Implement sequential model-based experiment design with OOD

  enhancement
  Feature

  MunskyGroup/SSIT#50 · Filter by author dmitrisvetlov opened on Jul 16, 2026
  

• GUI installation test failing on Windows R2026a

  Bug

  MunskyGroup/SSIT#45 · Filter by author dmitrisvetlov opened on Jun 16, 2026
  

• Fix references to state space of FSP solutions

  Bug

  MunskyGroup/SSIT#44 · Filter by author dmitrisvetlov opened on Apr 29, 2026
  1

  

• Stair Plots for Low Copy Number Populations are Cut Off and Uninformative

  good first issue
  Feature

  MunskyGroup/SSIT#37 · Filter by author egreen18 opened on Mar 24, 2026
  

• Update stored propensity function file prefix in model when regenerating propensity functions

  bug
  Bug

  MunskyGroup/SSIT#32 · Filter by author alexpopinga opened on Feb 13, 2026
  1

  

• Feature Request: Interactive Visualization Tool for Model Outputs

  MunskyGroup/SSIT#30 · Filter by author mowslasher83 opened on Nov 2, 2025

• Make command-line invocation of SSIT pipelines platform-agnostic

  MunskyGroup/SSIT#29 · Filter by author dmitrisvetlov opened on Jul 23, 2025
  1

  

• Fix and/or clarify data filename parameter of formPropensitiesGeneral

  bughelp wantedquestion
  MunskyGroup/SSIT#28 · Filter by author dmitrisvetlov opened on Jun 16, 2025
  2

  

• Add logical column for SSIT.parameters to either fit or keep at initial values

  enhancementshort-term
  Feature

  MunskyGroup/SSIT#25 · Filter by author alexpopinga opened on Apr 11, 2025
  

• Update figure calls to avoid stealing focus

  enhancementgood first issue
  Feature

  MunskyGroup/SSIT#22 · Filter by author Munsky opened on Mar 17, 2025

• Add generalised convolution method in SSIT

  enhancement
  Feature

  MunskyGroup/SSIT#20 · Filter by author alexpopinga opened on Jan 23, 2025
  

• Add routines for non-standard reactions - Division Dilution

  enhancement
  MunskyGroup/SSIT#17 · Filter by author Munsky opened on Sep 27, 2024
  

• Add rouitines for non-standard reaction type: Geometric Bursts.

  enhancement
  MunskyGroup/SSIT#16 · Filter by author Munsky opened on Sep 27, 2024
  1

  

• Create separate file to run Metropolis-Hastings using objective function in RonModelPipelineJuly11_2024.m

  enhancement
  MunskyGroup/SSIT#11 · Filter by author alexpopinga opened on Jul 25, 2024
  1

  

• Add FIM proposal capability to Bursting Gene MCMC and compare computational efficiency to Stan

  enhancementlong-term
  Feature

  MunskyGroup/SSIT#7 · Filter by author alexpopinga opened on Jul 12, 2024