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@NBISweden

NBIS - National Bioinformatics Infrastructure Sweden

NBIS is a distributed national bioinformatics infrastructure, supporting life sciences in Sweden.
README.md

About

A distributed national bioinformatics infrastructure supporting life sciences in Sweden

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  1. MrBayes MrBayes Public

    MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:

    C 280 87

  2. EMBLmyGFF3 EMBLmyGFF3 Public

    An efficient way to convert gff3 annotation files into EMBL format ready to submit.

    Python 67 15

  3. development-guidelines development-guidelines Public

    Development guidlines for software within NBIS.

    18 9

  4. excelerate-scRNAseq excelerate-scRNAseq Public

    Single RNA-seq data analysis with R (Finland, May, 2019)

    HTML 233 107

  5. GAAS GAAS Public

    Genome Assembly and Annotation Service code

    Perl 219 48

  6. IgDiscover-legacy IgDiscover-legacy Public archive

    Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads

    Python 16 10

Repositories

Showing 10 of 376 repositories
  • SCoRe_user_doc Public

    SCoRe user documentation

    NBISweden/SCoRe_user_doc's past year of commit activity
    Shell 0 GPL-3.0 0 4 0 Updated Oct 2, 2026
  • sda-download-ui Public

    Repository containing the UI implementation of the sda-download service

    NBISweden/sda-download-ui's past year of commit activity
    TypeScript 0 AGPL-3.0 0 7 7 Updated Oct 1, 2026
  • raukr-2027 Public

    Raukr 2027 • NBIS Summer School • Data Science with R

    NBISweden/raukr-2027's past year of commit activity
    0 0 0 0 Updated Oct 1, 2026
  • workshop-ngsintro Public

    Workshop • Intro to Bioinformatics using NGS data • 5 days

    NBISweden/workshop-ngsintro's past year of commit activity
    HTML 17 8 0 0 Updated Oct 1, 2026
  • workshop-epigenomics Public

    Epigenomics Workshop • Epigenomics Data Analysis • From Bulk to Single Cell

    NBISweden/workshop-epigenomics's past year of commit activity
    Lua 2 CC-BY-SA-4.0 1 0 0 Updated Oct 1, 2026
  • bird-ringing Public

    A web-based interface and database for managing bird-ringing data on behalf of the Bird Ringing Centre at the Swedish Museum of Natural History, implemented together with NBIS (National Bioinformatics Infrastructure Sweden)

    NBISweden/bird-ringing's past year of commit activity
    Python 1 MIT 0 37 3 Updated Oct 1, 2026
  • biovat Public

    BioVAT (BIOdiversity Variant Analysis Toolkit), a modular Nextflow pipeline for population genomics analysis of non-model organisms

    NBISweden/biovat's past year of commit activity
    Nextflow 0 MIT 0 40 (1 issue needs help) 5 Updated Oct 1, 2026
  • bp-dod-sda-gateway Public
    NBISweden/bp-dod-sda-gateway's past year of commit activity
    0 0 0 1 Updated Oct 1, 2026
  • theherdbook Public

    The Herd Book

    NBISweden/theherdbook's past year of commit activity
    TypeScript 1 AGPL-3.0 1 30 30 Updated Oct 1, 2026
  • TINT2026 Public

    Code used to perform the analyses described in the manuscript "Gene Expression Profiles in Benign Prostate Tissue Reflect Tumor Proximity, Grade, and Molecular subtype".

    NBISweden/TINT2026's past year of commit activity
    TeX 0 MIT 0 0 0 Updated Oct 1, 2026
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