Update config_dbs.json for Tier0 build 20260928

[hodgesf]

Automated proposal from the autobuild pipeline for Tier0 build 20260928. For human review only; the pipeline never merges.

All release artifacts are staged on rtxconfig@arax-databases.rtx.ai:/home/rtxconfig/tier0-20260928 with md5s matching the build.

config_dbs.json diff

diff --git a/code/config_dbs.json b/code/config_dbs.json
index 29b6f27..f018a8a 100644
--- a/code/config_dbs.json
+++ b/code/config_dbs.json
@@ -1,11 +1,11 @@
 {
    "database_downloads": {
-      "tier0_sqlite": "/translator/data/orangeboard/databases/tier0-20260621/tier0-info-for-overlay_v1.0_tier0-20260621.sqlite",
-      "kg2c_sqlite": "/translator/data/orangeboard/databases/tier0-20260621/tier0-info-for-overlay_v1.0_tier0-20260621.sqlite",
-      "fda_approved_drugs": "/translator/data/orangeboard/databases/tier0-20260408/fda_approved_drugs_v1.0.pickle",
-      "autocomplete": "/translator/data/orangeboard/databases/tier0-20260621/autocomplete_v1.0_tier0-20260621.sqlite",
-      "curie_to_pmids": "/translator/data/orangeboard/databases/tier0-20260621/curie_to_pmids_v1.1_tier0-20260621.sqlite",
-      "curie_ngd": "/translator/data/orangeboard/databases/tier0-20260621/curie_ngd_v1.1_tier0-20260621.sqlite",
+      "tier0_sqlite": "/translator/data/orangeboard/databases/tier0-20260928/tier0-info-for-overlay_v1.0_tier0-20260928.sqlite",
+      "kg2c_sqlite": "/translator/data/orangeboard/databases/tier0-20260928/tier0-info-for-overlay_v1.0_tier0-20260928.sqlite",
+      "fda_approved_drugs": "/translator/data/orangeboard/databases/tier0-20260928/fda_approved_drugs_v1.0.pickle",
+      "autocomplete": "/translator/data/orangeboard/databases/tier0-20260928/autocomplete_v1.0_tier0-20260928.sqlite",
+      "curie_to_pmids": "/translator/data/orangeboard/databases/tier0-20260928/curie_to_pmids_v1.0_tier0-20260928.sqlite",
+      "curie_ngd": "/translator/data/orangeboard/databases/tier0-20260928/curie_ngd_v1.0_tier0-20260928.sqlite",
       "explainable_dtd_db": "/translator/data/orangeboard/databases/tier0-20260621/ExplainableDTD_v1.0_tier0-20260621-all_with_paths.db",
       "cohd_database": "/translator/data/orangeboard/databases/KG2.8.0/COHDdatabase_v1.0_KG2.8.0.db"
    },

---

ARAX database build 20260928

Written 2026-10-06 15:28 PDT on eng-kec3048-45.

Inputs

• Tier0 graph: 1.0.2 2026-09-28
• PubMed: pubmed26
• Babel: 2026jul22
• Biolink model: 4.4.4

Run

• Build time: 0:44:29, from the first step starting (2026-10-06 14:43) to the last one finishing (2026-10-06 15:28)
• Tests: 42 passed, 0 failed, 0 skipped in 12 s (test_results/artifacts.xml, test_results/config_dbs.xml)

Artifacts

Step time and peak memory (PSS) are for the rule that built the artifact.

Artifact	Size	Step time	Peak memory	Built
autocomplete	350.8 MB	0:00:10	0.4 GB	2026-10-06 14:43
tier0-info-for-overlay	3.2 GB	0:03:15	4.3 GB	2026-10-06 14:46
curie_to_pmids	1.6 GB	0:38:50	16.8 GB	2026-10-06 15:25
curie_ngd	1.5 GB	0:02:25	12.6 GB	2026-10-06 15:28
fda_approved_drugs	75.1 KB	0:00:17	8.7 GB	2026-10-06 14:43
config_dbs	1.2 KB

Counts

Compared with the previous build, 20260621.

Artifact	Count	20260621	20260928	Change	%
autocomplete	terms rows	3,447,294	3,637,914	+190,620	+5.5%
tier0-info-for-overlay	edge_publications rows	7,285,007	8,239,919	+954,912	+13.1%
tier0-info-for-overlay	neighbors rows	1,670,341	1,766,267	+95,926	+5.7%
tier0-info-for-overlay	category_counts rows	62	68	+6	+9.7%
curie_to_pmids	CURIEs	1,217,788	1,268,368	+50,580	+4.2%
curie_to_pmids	(CURIE, PMID) pairs	391,272,012	400,817,016	+9,545,004	+2.4%
curie_ngd	CURIEs	717,348	759,178	+41,830	+5.8%
curie_ngd	CURIEs with neighbor NGDs	206,336	225,706	+19,370	+9.4%
curie_ngd	neighbor NGD pairs	11,094,440	13,043,799	+1,949,359	+17.6%
fda_approved_drugs	drug CURIEs	4,797	4,796	-1	-0.0%

[hodgesf]

/deploy

[github-actions]

Preview pytest

Build: autobuild/tier0-20260928 @ 3984ee7

Container: rtx_pr_2906

pytest: 177 passed, 0 failed, 144 skipped in 139.51s (0:02:19)
[2026-10-06T22:58:27Z] wrote the status page /var/www/arax-preview/index.html

Workflow run

[github-actions]

Preview live queries

Build: autobuild/tier0-20260928 @ 3984ee7

Endpoint: https://cicd.rtx.ai/2906/api/arax/v1.4/query

#	query	HTTP	s	results	KG nodes/edges	status
Example 1	interacts_with (CHEBI:46195)	200	1.88	58	59/132	Success
Example 2	treats inferred (MONDO:0015564)	200	13.97	117	224/1536	Success
Example 3	affects qualified (NCBIGene:1576)	200	3.88	500	506/1963	Success
⚠ Pathfinder	pathfinder (MONDO:0005011 to MONDO:0005180)	500	63.95	0	0/0	UnknownError
[2026-10-06T22:59:57Z] wrote the status page /var/www/arax-preview/index.html

Workflow run

[hodgesf]

/undeploy

[github-actions]

ARAX preview

🧹 ARAX preview for this PR was removed.