All pull requests

Pull requests

• Name RNA/DNA restraint residues as nucleotides

  #436·Mohith26 opened Nov 3, 2026·

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• Raise clear error for restraints on unknown chains

  #434·ramcav opened Oct 21, 2026·

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• Add a deterministic option so the same seed gives the same structure

  #433·LaelaZorana opened Oct 4, 2026·

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• Persist PAE/PDE/pLDDT matrices in Python-mode scores.npz

  #432·barlowa124 opened Sep 28, 2026·

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• Report pTM as aggregate score for single-chain inputs

  #431·barlowa124 opened Sep 28, 2026·

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• docs: clarify --seed behavior with CUDA

  #430·dajiaohuang opened Sep 26, 2026·

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• requirements: record torch 2.8.0 / 2.11.0 as checked against 2.6.0

  #428·siyuanj opened Aug 7, 2026·

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• Do not compute pTM token counts in the logits dtype

  #425·mooreneural opened Jul 30, 2026·

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• merge with upstream version

  #421·KeaunAmani opened May 21, 2026Contributor·

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• Fix several latent bugs in MSA, ranking, and structure-context code

  #420·mooreneural opened May 18, 2026·

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• fix: avoid warnings about typing deprecations and escape sequences

  #390·phaverty-ginkgo opened Jul 15, 2025·

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• ci: don't run tests when only markdown files are changed on a push

  #389·kitsiosk opened Jul 12, 2025·

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• Support batch inference

  #301·FangleiXue opened Feb 8, 2025·

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