Issues

• JS version detection does not parse alpha version correctly

  common-workflow-language/cwl-utils#477 · Filter by author volodymyrss opened on Oct 16, 2026
  2

• feature: cwl-docker-extract --container-engine parameter

  common-workflow-language/cwl-utils#475 · Filter by author vjaganat90 opened on Oct 8, 2026
  1

• Embedded process with a different cwlVersion rejected since 0.43 — should it be ignored instead?

  common-workflow-language/cwl-utils#470 · Filter by author vjaganat90 opened on Sep 24, 2026
  2

• cwltool is selecting the wrong container in aarch64 PJM compute nodes of Fugaku HPC

  common-workflow-language/cwl-utils#467 · Filter by author kinow opened on Sep 20, 2026
  4

• Issue with Docker tag handling

  common-workflow-language/cwl-utils#339 · Filter by author ndonyapour opened on Dec 5, 2024
  1

• CWL steps given in alphabetical order rather than the order in the CWL file

  common-workflow-language/cwl-utils#326 · Filter by author almanilsson opened on Oct 19, 2024

• new command: cwl-summary

  common-workflow-language/cwl-utils#314 · Filter by author mr-c opened on Aug 19, 2024

• Proposal for a Function to Generate JSON Schema for Workflow Parameter Files

  common-workflow-language/cwl-utils#273 · Filter by author suecharo opened on Jan 14, 2024
  3

• Inconsistent type attribute in CommandInputParameter

  common-workflow-language/cwl-utils#271 · Filter by author camilovelezr opened on Dec 19, 2023

• New tests needed to catch future regressions

  common-workflow-language/cwl-utils#260 · Filter by author mr-c opened on Nov 13, 2023

• test & support apptainer in addition to singularity-ce

  common-workflow-language/cwl-utils#185 · Filter by author mr-c opened on Nov 28, 2022

• test __eq__ & __hash__ with load/save of all CWL conformance tests

  common-workflow-language/cwl-utils#168 · Filter by author mr-c opened on Sep 13, 2022

• add utilities to help with parsing CWL Parameter References

  common-workflow-language/cwl-utils#162 · Filter by author mr-c opened on Sep 8, 2022

• docker_extract.py is not handling relative directories very well.

  common-workflow-language/cwl-utils#157 · Filter by author golharam opened on Sep 1, 2022
  1

• [Feature Request] utility function to access nested fields

  common-workflow-language/cwl-utils#106 · Filter by author tom-tan opened on Oct 2, 2021
  1

• new feature: implement cwltool --target / --single-{step,process} --print-{subgraph,target}

  common-workflow-language/cwl-utils#92 · Filter by author mr-c opened on Sep 4, 2021

• Subtree of workflow is updated only to v1.1

  common-workflow-language/cwl-utils#89 · Filter by author BJWiley233 opened on Jul 12, 2021

• Documentation for importing packed files

  common-workflow-language/cwl-utils#71 · Filter by author alexiswl opened on Apr 15, 2021
  10

• Fix https://cwl-utils.readthedocs.io/

  common-workflow-language/cwl-utils#57 · Filter by author nyue opened on Feb 9, 2021
  7

• expr refactor new feature: consolidate generated ExpressionTool/CommandLineTools

  common-workflow-language/cwl-utils#49 · Filter by author mr-c opened on Dec 2, 2020

• expr refactor: download conformance tests and process & run them

  common-workflow-language/cwl-utils#45 · Filter by author mr-c opened on Nov 12, 2020

• expr refactor: pickValue on a Workflow step input

  common-workflow-language/cwl-utils#44 · Filter by author mr-c opened on Nov 12, 2020

• container image puller: consider using https://github.com/biowdl/prepull-singularity

  common-workflow-language/cwl-utils#35 · Filter by author mr-c opened on Sep 30, 2020

• schema_salad.exceptions.ValidationExceptions parsing certain data structures

  common-workflow-language/cwl-utils#31 · Filter by author leipzig opened on Sep 4, 2020
  12

  

• document release process

  common-workflow-language/cwl-utils#22 · Filter by author mr-c opened on Jun 13, 2020
  3