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UnboundLocalError: local variable 'out_bam_file' referenced before assignment #954
Description
When I run:
hicBuildMatrix -s ../../2.map/r1.sam ../../2.map/r2.sam -o hic_matrix.h5 --binSize 10000 --QCfolder QC --doTestRun --outBam TestRun.bam -rs DpnII.bed HinfI.bed -seq GATC GA.TC --danglingSequence GATC A.T
it throw an error message:
Traceback (most recent call last):
File "/share/apps/anaconda3/envs/python3_2/bin/hicBuildMatrix", line 7, in <module>
main()
File "/share/apps/hicexplorer/lib/python3.8/site-packages/hicexplorer/hicBuildMatrix.py", line 270, in main
pKeepSelfCircles=args.keepSelfCircles, pKeepSelfLigation=args.keepSelfLigation, pGenomeAssembly=args.genomeAssembly)
File "/share/apps/hicexplorer/lib/python3.8/site-packages/hicexplorer/lib/buildMatrixMethods.py", line 1169, in createMatrix
out_bam_file.write(mate1)
UnboundLocalError: local variable 'out_bam_file' referenced before assignment
hicBuildMatrix version info:
hicBuildMatrix 3.7.6
How can I solve it?
Activity