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chore: Update the Galaxy wrappers - #1465

Merged
WardDeb merged 35 commits into
deeptools:masterfrom
pavanvidem:gxy-4
Sep 13, 2026
Merged

chore: Update the Galaxy wrappers#1465
WardDeb merged 35 commits into
deeptools:masterfrom
pavanvidem:gxy-4

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@pavanvidem

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Updated requirements to include Docker container for deepTools.

Welcome to deepTools GitHub repository! Please check the following regarding
your pull request :

  • Does the PR contain new feature?
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    (e.g. feat: ..., fix: ...)?
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Updated requirements to include Docker container for deepTools.
@pavanvidem pavanvidem changed the title Update the deepTools Update the Galaxy wrappers Sep 8, 2026
@WardDeb WardDeb changed the title Update the Galaxy wrappers feat: Update the Galaxy wrappers Sep 8, 2026
@WardDeb WardDeb changed the title feat: Update the Galaxy wrappers chore: Update the Galaxy wrappers Sep 8, 2026
pavanvidem and others added 25 commits September 8, 2026 16:43
Replaced Docker container requirement with package requirement for deeptools.
…ry, plotCoverage, plotFingerprint and plotEnrichment
@@ -5,8 +5,7 @@
<token name="@GALAXY_VERSION@">23.2</token>

@pavanvidem pavanvidem Sep 11, 2026

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@bgruening should I update this to 25.0?
@WardDeb do you know whether there is an MPI Galaxy server that uses an older version?

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the MPI one will (likely) be refactored to an up-to-date version, so no need to keep this in mind here

@pavanvidem pavanvidem Sep 12, 2026

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It is the version of the Galaxy instance. If we increase it to 25.0 and the MPI is still using an older version, then these tools cannot be installed. Maybe it is a good idea not to touch it now :)

@pavanvidem

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It is ready

@WardDeb
WardDeb merged commit d024433 into deeptools:master Sep 13, 2026
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2 participants