Issues

• bugfix: Non-Square leaves complicate training

  dpeerlab/segger#96 · Filter by author Tobiaspk opened on Oct 7, 2026

• Recommended segger workflow with nucleus only segmentation (no membrane or cytoplasm stain)

  dpeerlab/segger#94 · Filter by author ivobrengt opened on Sep 29, 2026

• Path assertions and create output paths automatically

  dpeerlab/segger#92 · Filter by author Tobiaspk opened on Sep 18, 2026

• Feature Request: Export compatible with xeniumranger import-segmentation

  dpeerlab/segger#88 · Filter by author Tobiaspk opened on Sep 16, 2026

• Downsample transcripts (max_transcripts) when building the tiling quadtree to bound memory / avoid overflow

  dpeerlab/segger#77 · Filter by author Tobiaspk opened on Aug 21, 2026

• [integration/peerlab] Insufficient membrane expansion if membrane markers were used

  dpeerlab/segger#52 · Filter by author Tobiaspk opened on May 27, 2026

• [integration/peerlab] Tiling fails in ~3-5% across datasets

  dpeerlab/segger#40 · Filter by author Tobiaspk opened on May 14, 2026
  7

• [integration/peerlab] Improve efficiency of spatial joins

  dpeerlab/segger#39 · Filter by author Tobiaspk opened on May 12, 2026
  2

• [release/v2-stable] Troubleshooting

  dpeerlab/segger#27 · Filter by author jpark27 opened on Mar 17, 2026
  4

• [release/v2-stable] Seg2Explorer not working

  dpeerlab/segger#26 · Filter by author jpark27 opened on Mar 15, 2026
  1

• [integration/peerlab] Pre-commit hooks

  dpeerlab/segger#10 · Filter by author WeilerP opened on Jan 29, 2026