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Migrate GeometricWidthDiscretiser.fit() to narwhals, add polars support - #1041

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solegalli merged 4 commits into
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narwhals-geometric-width-discretiser
Sep 18, 2026
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solegalli merged 4 commits into
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narwhals-geometric-width-discretiser

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Migrates GeometricWidthDiscretiser.fit() to narwhals with polars support.

fit()'s only pandas dependency was X[var].min()/.max() to compute the geometric progression's anchors — everything downstream (np.power/np.r_/np.sort bin-edge math) was already plain numpy. Replaced the pandas indexing with nw.from_native(X, eager_only=True).get_column(var).min()/.max(), which returns a numpy/python float scalar on both backends and feeds np.power identically.

Merge vs split: benchmarked old pandas-native fit() vs narwhals-on-pandas / narwhals-on-polars at 10k/50k/100k rows × 1/2/10 cols (min/max dominate cost; bin-edge math is O(bins) not O(n)):

  • narwhals-on-pandas: 1.0–1.3x at realistic sizes (the 1.8x at 10k/1-col is sub-ms fixed overhead) — minimal loss, single narwhals path, no is_pandas split.
  • narwhals-on-polars: ~0.35–0.7x (1.4–2.8x faster).

Verified new fit() bin edges against the old pandas implementation across edge cases (skewed/normal/mixed-sign distributions, two-point range, min == max degenerate case) on both backends — exact equality. Cross-checked full fit_transform() (both return_object and return_boundaries) between pandas and polars — identical.

Tests: dataframe-touching tests in test_geometric_width_discretiser.py parametrized over pd.DataFrame/pl.DataFrame, replacing pandas-only fixtures with local dicts. Init-only param-validation tests unchanged.

Verified: tests/test_discretisation — 114 passed, same 5 pre-existing check_estimator failures. flake8 / mypy clean, sphinx -W clean. User-guide worked example re-verified against real output; "With polars" section added.


Stacked on narwhals-discretisation-base (its own PR). Until that merges this PR's diff also contains the shared BaseDiscretiser commit; review that one first.

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solegalli force-pushed the narwhals-geometric-width-discretiser branch from 734389a to d023f55 Compare September 14, 2026 20:46
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Updated this branch:

Locally: test_geometric_width_discretiser.py 32 passed; no new failures in tests/test_discretisation.

@solegalli
solegalli force-pushed the narwhals-geometric-width-discretiser branch from d023f55 to 429d5d0 Compare September 15, 2026 10:06
solegalli and others added 3 commits September 18, 2026 13:17
fit()'s only pandas dependency was X[var].min()/.max() to compute the
geometric progression's min/max anchors - everything downstream (the
np.power/np.r_/np.sort bin-edge math) was already plain numpy and
needed no changes. Replaced the pandas indexing with
nw.from_native(X, eager_only=True).get_column(var).min()/.max(),
which returns a numpy/python float scalar on both backends and feeds
np.power identically either way.

Benchmarked old pandas-native fit() vs the new narwhals-on-pandas and
narwhals-on-polars paths at 10k/50k/100k rows x 1/2/10 columns (200
iterations each, min/max dominate cost either way since bin-edge math
is O(bins) not O(n)):
- narwhals-on-pandas: 1.0-1.3x of pandas-native at realistic sizes
  (50k-100k rows); the 1.8x seen only at the smallest 10k-row/1-col
  case is sub-millisecond fixed per-call overhead. Minimal loss -
  merged into a single narwhals path, no is_pandas split.
- narwhals-on-polars: ~0.35-0.7x of pandas-native (i.e. 1.4-2.8x
  *faster*), consistent with the sibling BaseDiscretiser.transform()
  migration finding polars faster at every size tested.

Verified: diffed new fit() bin edges against the old pandas
implementation across edge cases (skewed/normal/negative-and-positive
distributions, two-point range, and the min==max degenerate case) on
both backends - numerically identical (exact equality, not just
close). Cross-checked full fit_transform() (both return_object and
return_boundaries combinations) between pandas and polars inputs -
identical output values. Manually reran the GeometricWidthDiscretiser
user guide's house_prices worked example (binner_dict_ and interval
width numbers) against real output to confirm the docs still match
current behaviour (the precision example there was already fixed in
#986, prior to this branch) before adding a new "With polars" section
with verified output.

tests/test_discretisation/test_geometric_width_discretiser.py: the
dataframe-touching tests are now parametrized over
pd.DataFrame/pl.DataFrame per AGENTS.md, replacing the pandas-only
df_normal_dist/df_na/df_vartypes fixtures with local dicts so the same
input produces and asserts the same output on both backends (bin
edges, transform values via narwhals-agnostic extraction, dtype
checks, and NA-error cases). Init-only param-validation tests are
unchanged since they never touch a dataframe.

flake8 and mypy clean. Module imports with pandas blocked (loaded
standalone, since sibling discretiser files in this package aren't
migrated yet and still import pandas at their own module level).
sphinx -W build clean (only the pre-existing unrelated
linkcode_resolve warning). Full tests/test_discretisation suite: 114
passed, same 5 pre-existing failures as the unmodified base branch
(test_check_estimator_discretisers.py - sklearn's check_estimator
feeds raw numpy arrays, rejected by check_X()'s dataframe-only
contract since the narwhals migration; unrelated to this change).

Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>
…iser tests

Replace the file-local _normal_dist_data/_get_column_values/_get_column_dtype
helpers with the data_normal_dist fixture, make_df, isinstance(X, make_df)
plus to_dict() checks, missing values written as None, and
pytest.raises(match=re.escape(msg)).

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
@solegalli
solegalli force-pushed the narwhals-geometric-width-discretiser branch from 429d5d0 to 6f95be9 Compare September 18, 2026 11:17
Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
@solegalli
solegalli merged commit c3cfc9d into narwhals-migration Sep 18, 2026
4 of 10 checks passed
@solegalli
solegalli deleted the narwhals-geometric-width-discretiser branch September 18, 2026 12:04
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