Issues

• TravisCI -> gh actions

  fhcrc/seqmagick#99 · Filter by author jaredgalloway opened on Mar 11, 2023

• nose -> nose2

  fhcrc/seqmagick#98 · Filter by author jaredgalloway opened on Mar 11, 2023

• NameError: name 'IUPAC' is not defined in primer-trim.py

  fhcrc/seqmagick#95 · Filter by author bowmanjeffs opened on Apr 8, 2021
  1

• Trim high identity sites/columns from alignment?

  fhcrc/seqmagick#83 · Filter by author metasoarous opened on Mar 31, 2020

• fasta to nexus conversion -- ValueError: Sequences must all be the same length

  fhcrc/seqmagick#81 · Filter by author asttra opened on Nov 30, 2019
  2

• pip3 install preferred over pip3 install

  fhcrc/seqmagick#78 · Filter by author tseemann opened on May 30, 2018
  1

• adding N to the "gap characters"

  fhcrc/seqmagick#72 · Filter by author dunleavy005 opened on Apr 2, 2018
  3

• Obtain the reverse fastq of forward single reads using seqmagick?

  fhcrc/seqmagick#70 · Filter by author galud27 opened on Mar 19, 2018

• restore support for bz2 compression

  fhcrc/seqmagick#66 · Filter by author nhoffman opened on Dec 6, 2017

• Behavior of --squeeze coupled with sequence selection

  fhcrc/seqmagick#64 · Filter by author metasoarous opened on Jan 26, 2017

• more detailed seqmagick info on specific sequences

  fhcrc/seqmagick#63 · Filter by author metasoarous opened on Jan 26, 2017

• backtrans-align breaks if any dna seq length isn't a multiple of 3

  fhcrc/seqmagick#62 · Filter by author metasoarous opened on Jan 20, 2017

• backtrans-align should have an option for sorting sequences for you

  fhcrc/seqmagick#61 · Filter by author metasoarous opened on Jan 20, 2017

• SIGPIPE problem in Windows

  fhcrc/seqmagick#58 · Filter by author katieMlyons opened on Jun 29, 2016
  2

• would fasta comparison fit into the seqmagick framework?

  feature
  fhcrc/seqmagick#49 · Filter by author cswarth opened on Apr 8, 2015