Issues

• Will differences in sequencing depth/reads length/insert size affect the results, if all are above 20×?

  lh3/psmc#62 · Filter by author kuangzhuoran opened on Mar 27, 2025
  1

• Empty .psmcfa File

  lh3/psmc#61 · Filter by author Rashed-shou opened on Aug 22, 2024
  4

• Input data

  lh3/psmc#60 · Filter by author choi-evolution-lab opened on Jun 26, 2024

• problem with psmc_plot.pl

  lh3/psmc#59 · Filter by author cyadrogarcia opened on May 17, 2024
  2

• Fraction of hets missed due to low coverage

  lh3/psmc#58 · Filter by author aguilar-gomez opened on Mar 29, 2024

• A straight line in result figure.

  lh3/psmc#57 · Filter by author se420 opened on Jan 4, 2024
  1

• Input file: Resequence.BAM file Select type?

  lh3/psmc#56 · Filter by author wuyh0328 opened on Dec 1, 2023

• Error while running Plot

  lh3/psmc#55 · Filter by author lpabonv opened on Nov 1, 2023
  3

• Assembly on scaffold level

  lh3/psmc#54 · Filter by author Meer9234 opened on Oct 13, 2023

• Can't set mutation rate when plotting

  lh3/psmc#53 · Filter by author jacquelinemattos opened on Oct 4, 2023

• How to plot multiple boostrap results in one image?

  lh3/psmc#52 · Filter by author cnxiaobo94 opened on Jul 25, 2023
  5

• About the selection of reference genome

  lh3/psmc#50 · Filter by author cnxiaobo94 opened on Apr 14, 2023
  1

• Cannot run psmc code

  lh3/psmc#49 · Filter by author shadowtwinkle opened on Oct 4, 2022
  1

• Genome masking

  lh3/psmc#48 · Filter by author Larissa-Arantes opened on Sep 26, 2022
  1

• Segmentation fault (core dumped)

  lh3/psmc#46 · Filter by author kavazquez opened on Aug 26, 2022
  3

• How to check the recombination event?

  lh3/psmc#45 · Filter by author DuttaAnik opened on Jul 25, 2022
  5

• [Question] Is Linux ARM64 a supported architecture?

  lh3/psmc#44 · Filter by author gancho-ivanov opened on Jul 20, 2022
  3

• Bootstrapping running into erorr 'Use of uninitialized value in division (/)'

  lh3/psmc#43 · Filter by author elizeng opened on Apr 28, 2022
  2

• Old pipeline deprecated, using bcftools consensus instead?

  lh3/psmc#42 · Filter by author elizeng opened on Mar 1, 2022
  3

• psmc: cli.c:72: psmc_parse_pattern: Assertion `isdigit(*p) || *p == '*' || *p == '+' || *p == '\0'' failed.

  lh3/psmc#40 · Filter by author kuangzhuoran opened on Dec 23, 2021
  1

• "Illegal division by zero" when executig psmc.plot.pl - sample.psmc file with NaNs

  lh3/psmc#39 · Filter by author AliceIob opened on Oct 7, 2021
  8

• gen_raw_mask.pl not working correctly

  lh3/psmc#38 · Filter by author NicMAlexandre opened on Oct 5, 2021
  3

• Sudden increases in Ne

  lh3/psmc#37 · Filter by author plubbe opened on Oct 4, 2021
  3

• pseudo-diploid

  lh3/psmc#36 · Filter by author 7melo7 opened on Sep 28, 2021
  1

• Atomic time interval parameters

  lh3/psmc#35 · Filter by author plubbe opened on Jul 27, 2021
  3