Issues

• Requesting prepared dataset csv files and 10-fold splits for reproducing Lu et al. 2021 Nature BME CLAM experiments

  mahmoodlab/CLAM#328 · Filter by author flyingpiggg666 opened on Oct 9, 2026

• Low GPU utilization for extract_features_fp.py

  mahmoodlab/CLAM#327 · Filter by author RainbowC0 opened on Jul 27, 2026

• Bug: segmentTissue crashes when seg_level=-1

  mahmoodlab/CLAM#322 · Filter by author ItzDEXX opened on Jan 23, 2026

• What is the functionality of step_size in patching

  mahmoodlab/CLAM#320 · Filter by author mesa666 opened on Dec 8, 2025
  1

• Facing issue to install. I can not understand how to install/use it.

  mahmoodlab/CLAM#316 · Filter by author ebpranto opened on Aug 8, 2025

• segmentation problem

  mahmoodlab/CLAM#313 · Filter by author ScorpioBao opened on May 19, 2025
  1

• To deactivate an active environment, use conda deactivate

  mahmoodlab/CLAM#311 · Filter by author Helenology opened on Apr 27, 2025

• Not a JPEG file: starts with 0xff 0x11

  mahmoodlab/CLAM#310 · Filter by author PixelbPioneer opened on Apr 16, 2025
  1

• How to use Heatmap for My model?

  mahmoodlab/CLAM#308 · Filter by author Tengxf opened on Apr 9, 2025
  2

• size mismatch while using CLAM_SB

  mahmoodlab/CLAM#306 · Filter by author Himanshunitrr opened on Apr 3, 2025
  1

• UNI2 embedding extraction

  mahmoodlab/CLAM#305 · Filter by author FrancescaMiccolis opened on Mar 13, 2025
  1

• question about eval.py

  mahmoodlab/CLAM#304 · Filter by author ShylaNL opened on Mar 12, 2025

• Qusetion for dataset for task_1

  mahmoodlab/CLAM#303 · Filter by author sixChocolate opened on Mar 6, 2025

• Patch feature extraction with Titan

  mahmoodlab/CLAM#302 · Filter by author JAAY-AI opened on Mar 6, 2025
  2

• Question about 'legacy_support' in 'create_patches_fp.py'

  mahmoodlab/CLAM#301 · Filter by author GeneGee opened on Feb 20, 2025
  1

• run create_patches_fp.py , masks file is good， but segmentation results of stitches file are mismatched.

  mahmoodlab/CLAM#300 · Filter by author mengxfei opened on Feb 19, 2025
  2

• any tips for faster creation of heatmaps?

  mahmoodlab/CLAM#298 · Filter by author ericwang10 opened on Feb 6, 2025
  2

• long time for feature extraction

  mahmoodlab/CLAM#296 · Filter by author Saurabh528 opened on Jan 30, 2025

• Question about UNI-generated tile-level embeddings and CLAM-UNI’s extract_features_fp.py

  mahmoodlab/CLAM#294 · Filter by author krudo-taco opened on Jan 17, 2025

• Why are only 0 coordinates extracted?

  mahmoodlab/CLAM#293 · Filter by author lsnls opened on Jan 17, 2025
  6

• seg-level

  mahmoodlab/CLAM#292 · Filter by author zaizaiwa opened on Jan 13, 2025
  2

• CONCH encoder embedding

  mahmoodlab/CLAM#290 · Filter by author niuhulu-rui opened on Dec 19, 2024
  1

• Regarding the application of create_heatmap to other models.

  mahmoodlab/CLAM#288 · Filter by author superli6 opened on Dec 2, 2024

• evaluation script vs evaluation during training

  mahmoodlab/CLAM#286 · Filter by author mhoibo opened on Nov 20, 2024

• Request for Code to Generate Fine-Grained Heatmaps in CLAM Project

  mahmoodlab/CLAM#285 · Filter by author rongguangda opened on Nov 20, 2024