Issues

• anvi-self-test --suite mini do not pop-up interactive interface

  merenlab/anvio#2849 · Filter by author 473021677 opened on Oct 6, 2026
  2

• [FEATURE REQUEST] anvi-get-tRNA-isoacceptor-frequencies

  merenlab/anvio#2816 · Filter by author tucker4 opened on Sep 25, 2026
  1

  

• [FEATURE REQUEST] Genome accession in fasta-txt

  merenlab/anvio#2814 · Filter by author FlorianTrigodet opened on Sep 24, 2026
  1

• [BUG] in metagenomics-wf samples ending on _LR and _SR are silently dropped in reference-mode

  bug
  merenlab/anvio#2800 · Filter by author AviHuene opened on Sep 1, 2026

• [FEATURE REQUEST] anvi-gen-structure-database with Colabfold and new input format

  feature requeststructure database
  merenlab/anvio#2754 · Filter by author FlorianTrigodet opened on Jul 19, 2026
  

• DSSP/MKDSSP not installable in the anvi'o conda env

  dependencies
  merenlab/anvio#2739 · Filter by author FlorianTrigodet opened on Jul 3, 2026
  1

• [BUG] anvi-merge fails with single profile db having different number of nucleotides/contigs

  merenlab/anvio#2707 · Filter by author mathbournew75-ship-it opened on Jun 5, 2026
  9

• [DISCUSSION] anvi-draw-kegg-pathways on (Meta)transcriptomic data?

  merenlab/anvio#2705 · Filter by author rpeguil opened on Jun 4, 2026
  5

  

• [FEATURE REQUEST] Anvio workflow builder interface

  hackathon 2026
  merenlab/anvio#2697 · Filter by author bastien-camillo opened on Jun 1, 2026

• [FEATURE REQUEST] Export Genome Specific tRNA Modification Profiles

  merenlab/anvio#2693 · Filter by author tucker4 opened on May 28, 2026
  2

  

• [BUG] anvi-predict-metabolic-exchanges compound issue

  merenlab/anvio#2687 · Filter by author michoug opened on May 27, 2026

• [PROJECT IDEA] A more elegant way to describe connections between anvi'o programs and artifacts

  small project
  Feature

  merenlab/anvio#2686 · Filter by author meren opened on May 27, 2026
  

• [BUG] KeyError in anvi-cluster-contigs

  merenlab/anvio#2685 · Filter by author igorspp opened on May 27, 2026
  2

• [TECHNICAL ISSUE] Refactoring anvio/utils.py

  designfeature
  Task

  merenlab/anvio#2677 · Filter by author meren opened on May 23, 2026 · v9.1
  9

  

• [FEATURE REQUEST] Updating/improving the ecophylo workflow

  hackathon 2026
  merenlab/anvio#2675 · Filter by author btrouche opened on May 22, 2026
  2

  

• [FEATURE REQUEST] Add visualisation of positive/negative scales to anvi-interactive

  hackathon 2026
  merenlab/anvio#2674 · Filter by author AviHuene opened on May 22, 2026
  6

  

• [DISCUSSION] Citation tracking in anvi'o (which requires explicit program and DB descriptions?)

  hackathon 2026
  merenlab/anvio#2662 · Filter by author meren opened on May 21, 2026
  4

• [FEATURE REQUEST] Visualize and work with normalized gene expression coverage in anvi'o

  hackathon 2026
  merenlab/anvio#2661 · Filter by author tucker4 opened on May 21, 2026
  4

  

• [FEATURE REQUEST] Automatically gather sources of tools used and have a program which can be called to print a list of sources which should be cited

  hackathon 2026
  merenlab/anvio#2660 · Filter by author iwilkie opened on May 21, 2026

• [FEATURE REQUEST] Support containers for external programs

  hackathon 2026
  merenlab/anvio#2656 · Filter by author telatin opened on May 21, 2026
  1

• Clean sys.exit() usage

  merenlab/anvio#2648 · Filter by author ulgens opened on May 20, 2026

• [FEATURE REQUEST] Domain-level gene annotation

  hackathon 2026
  merenlab/anvio#2627 · Filter by author ChiaraVanni opened on May 20, 2026
  

• [FEATURE REQUEST] define a function to evaluate annotation consistency within gene clusters

  hackathon 2026
  merenlab/anvio#2626 · Filter by author ChiaraVanni opened on May 20, 2026
  1

• [DISCUSSION] Anvi'o as nf-core module

  hackathon 2026
  merenlab/anvio#2624 · Filter by author telatin opened on May 20, 2026

• [FEATURE REQUEST] Interactive interface: list of improvements

  hackathon 2026
  merenlab/anvio#2621 · Filter by author FlorianTrigodet opened on May 20, 2026
  1