Skip to content

Pull requests: nf-core/modules

New pull request New
176 Open 9,199 Closed
176 Open 9,199 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Filter by reviews
No reviews Review required Approved review Changes requested
Assignee
Filter by who’s assigned
Assigned to nobody Loading
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Pull requests list

Add sativaepang/* modules: reference, lootasks, looplace, looscore
#12910 opened Sep 9, 2026 by erikrikarddaniel Member Loading…
13 of 14 tasks
1
update module: fastqdl
#12909 opened Sep 9, 2026 by camlloyd Member Loading…
2 of 17 tasks
1
orthofinder: remove mv line
#12899 opened Sep 7, 2026 by FernandoDuarteF Contributor Loading…
3 of 17 tasks
9
CI: test composite change detection action
#12898 opened Sep 7, 2026 by adamrtalbot Contributor • Draft
3 of 7 tasks
fix(clustalo/align): wait for compression and propagate pigz failures
#12894 opened Sep 6, 2026 by dnncha Loading…
5
Update fastaguard to 1.0.0
#12892 opened Sep 5, 2026 by ehsanestaji Contributor • Draft
6 of 7 tasks
fix: deduplicate bclconvert FASTQ outputs
#12883 opened Sep 3, 2026 by atrigila Contributor • Draft
Fix miniconda version
#12879 opened Sep 3, 2026 by LouisLeNezet Contributor Loading…
17 tasks
3
New module: xengsort/classify Ready for Review
#12864 opened Sep 1, 2026 by LeonHornich Contributor Loading…
12 of 14 tasks
1
Update pre-commit hooks size/xs
#12860 opened Sep 1, 2026 by renovate Bot Loading…
2 tasks
samtools/merge: emit .bai/.crai index files by default (fixes #4261)
#12859 opened Sep 1, 2026 by ramakrishna-p21 Loading…
12 tasks done
1
9
update module: bioformats2raw
#12857 opened Aug 31, 2026 by camlloyd Member Loading…
3 of 17 tasks
1
Add STAR Suite alignment and genome generation modules
#12826 opened Aug 27, 2026 by lhhunghimself Loading…
11 of 12 tasks
1
Add parabricks/deepsomatic size/m
#12797 opened Aug 26, 2026 by SPPearce Contributor • Draft
3
Migrate starfusion/build to topics size/l
#12748 opened Aug 18, 2026 by mribeirodantas Member Loading…
17 tasks
1
@mribeirodantas
16
Remove fixed UMI-tools seeds Do not merge yet
#12662 opened Aug 12, 2026 by pinin4fjords Member Loading…
5
Add STRAGLR module
#12644 opened Aug 10, 2026 by lukejroche Loading…
2 tasks
1
1
Update to topic qualimap
#12625 opened Aug 7, 2026 by LouisLeNezet Contributor Loading…
17 tasks
1
@LouisLeNezet
7
Provide .fna support for pbmm2/align
#12602 opened Aug 6, 2026 by stvdsomp Loading…
6 tasks done
4
Update to topic phyloflash Do not merge yet
#12577 opened Aug 4, 2026 by LouisLeNezet Contributor Loading…
17 tasks
1
@LouisLeNezet
5
Add subworkflow for gridss somatic structural variant calling
#12574 opened Aug 4, 2026 by imsarath Contributor Loading…
14 of 17 tasks
1
@imsarath
12
Swap repeatmodeler to topics conda-fail size/m
#12513 opened Aug 3, 2026 by SPPearce Contributor • Draft
17 tasks
2
Swap repeatmasker to topics Ready for Review size/m
#12506 opened Aug 3, 2026 by SPPearce Contributor Loading…
2
4
Update dependency prettier to v3.9.6 size/xs
#12487 opened Aug 1, 2026 by renovate Bot Loading…
2 tasks
Migrate amulety to topics gpu module uses GPU help wanted Extra attention is needed
#12481 opened Jul 31, 2026 by atrigila Contributor • Draft Adopt topic channels in all nf-core modules
4
ProTip! Mix and match filters to narrow down what you’re looking for.