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Develop - #25

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pnrobinson wants to merge 45 commits into

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develop

Open

Develop#25
pnrobinson wants to merge 45 commits into
masterfrom
develop

Commits on Sep 11, 2021
- Simplify pom.xml files
  Daniel Danis
  committed
  5fb35d5
- Revert resource filtering
  Daniel Danis
  committed
  da7f7cc
- Use `slf4j-simple` for logging in tests
  Daniel Danis
  committed
  c5259e1
Commits on Sep 13, 2021
- Change `groupId`s, add `validator-jsonschema` module, update POMs
  Daniel Danis
  committed
  e643cc3
- Outline validation protocol, reorganize packages, implement JSONschema validator
  Daniel Danis
  committed
  3a6957e
- Remove `json-schema-validator` from `validator-core`
  Daniel Danis
  committed
  c1fefde
Commits on Sep 14, 2021
- Merge pull request #11 from ielis/validator_apis
  pnrobinson
  authored
  35ea811
Commits on Sep 15, 2021
- testing refactor
  pnrobinson
  committed
  b639292
Commits on Sep 16, 2021
- datagen for testing
  pnrobinson
  committed
  808fe37
Commits on Sep 17, 2021
- adding 'type' error type
  pnrobinson
  committed
  045c258
- adding tests for disease element
  pnrobinson
  committed
  3a8b168
- Clean up commented code
  Daniel Danis
  committed
  1602ee1
Commits on Sep 22, 2021
- Merge pull request #19 from ielis/testing_refactor
  pnrobinson
  authored
  0af3b87
- Merge pull request #16 from phenopackets/testing_refactor
  pnrobinson
  authored
  fd220ad
- correcting params
  pnrobinson
  committed
  4de85ca
- fix JSON schema for vitalStatus
  pnrobinson
  committed
  b4176cd
- fix JSON schema for timeElement
  pnrobinson
  committed
  7d51403
Commits on Sep 26, 2021
- fixed disease-stage definition
  pnrobinson
  committed
  89e64bf
- prototype cli app
  pnrobinson
  committed
  52b6c5e
- prototype OntologyValidator
  pnrobinson
  committed
  7a13c78
Commits on Sep 27, 2021
- refactor ValidationInfoType
  pnrobinson
  committed
  0cf1996
- cleanup
  pnrobinson
  committed
  f964880
Commits on Sep 30, 2021
- Work on `validator-ontology`
  Daniel Danis
  committed
  75d3fb6
- Use Java 16, simplify POMs, add description
  Daniel Danis
  committed
  a7d8f0f
- Remove redundant POM lines
  Daniel Danis
  committed
  563dd15
- Simplify and standardize JSONschema validator.
  Daniel Danis
  committed
  a45e1b4
- Refactor HpoValidatorTest
  Daniel Danis
  committed
  fb8c52c
Commits on Oct 4, 2021
- Merge pull request #21 from ielis/finish-refactor
  pnrobinson
  authored
  d7e4722
- Merge pull request #20 from phenopackets/finish-refactor
  pnrobinson
  authored
  458f973
Commits on Oct 7, 2021
- update to use phenotools for creating examples for testing.
  pnrobinson
  committed
  c42b7c7
Commits on Oct 8, 2021
- fixed bug (disease requires at least one ontology class (term)
  pnrobinson
  committed
  089d289
- adding definitions for measurement
  pnrobinson
  committed
  7217939
- adding tests for measurement (Value)
  pnrobinson
  committed
  d18cbe4
- fixed JSON Schema for Value (Measurement)
  pnrobinson
  committed
  7327e42
- fixed JSON Schema for ComplexValue (Measurement)
  pnrobinson
  committed
  6297fdf
- ComplexValue (Measurement) tests
  pnrobinson
  committed
  3dece6b
Commits on Oct 9, 2021
- fixed definition of Evidence
  pnrobinson
  committed
  127a851
- new unit tests
  pnrobinson
  committed
  7e56aec
Commits on Oct 11, 2021
- Merge pull request #22 from phenopackets/measurementJSONschema
  pnrobinson
  authored
  377d2eb
- biosample validation
  pnrobinson
  committed
  ddb774f
- refactoring
  pnrobinson
  committed
  f244cae
- updating for new phenopacket-tools API
  pnrobinson
  committed
  15e3f18
- refactor to use JSON string
  pnrobinson
  committed
  9eda567
- Merge pull request #23 from phenopackets/refactor2
  pnrobinson
  authored
  3c288fb
- Merge pull request #24 from phenopackets/measurementJSONschema
  pnrobinson
  authored
  1ac487f

Commits

Commits on Sep 11, 2021

Commits on Sep 13, 2021

Commits on Sep 14, 2021

Commits on Sep 15, 2021

Commits on Sep 16, 2021

Commits on Sep 17, 2021

Commits on Sep 22, 2021

Commits on Sep 26, 2021

Commits on Sep 27, 2021

Commits on Sep 30, 2021

Commits on Oct 4, 2021

Commits on Oct 7, 2021

Commits on Oct 8, 2021

Commits on Oct 9, 2021

Commits on Oct 11, 2021