Issues

• small test dataset

  quinlan-lab/STRling#122 · Filter by author dalyasalih19 opened on Jul 25, 2024
  1

• Comparing STR length from STRling, which value would be appropriate to use?

  quinlan-lab/STRling#121 · Filter by author chanhee22kim opened on Feb 21, 2024

• strling-outliers.py: Incompatibility with newer Pandas version

  quinlan-lab/STRling#119 · Filter by author ryanmcggg opened on Feb 13, 2024
  4

• Typo in command line help

  documentationgood first issuelower priority
  quinlan-lab/STRling#118 · Filter by author hdashnow opened on Dec 8, 2023

• L.start <= R.start

  quinlan-lab/STRling#113 · Filter by author christopher-schroeder opened on Mar 7, 2023
  3

• STRling warning message and empty binaries

  quinlan-lab/STRling#107 · Filter by author hdashnow opened on Jun 29, 2022

• Exclude NaN rows in STRs.tsv output

  good first issue
  quinlan-lab/STRling#105 · Filter by author hdashnow opened on Apr 20, 2022

• 0-length intervals

  quinlan-lab/STRling#104 · Filter by author hdashnow opened on Jan 10, 2022

• Assertion error for reads without sequence

  quinlan-lab/STRling#103 · Filter by author christopher-schroeder opened on Jan 7, 2022
  5

• Issue with low proportion_repeat

  quinlan-lab/STRling#102 · Filter by author mhguo1 opened on Dec 16, 2021
  7

• Inconsistent soft-clipped reads may impact length estimates

  wontfix
  quinlan-lab/STRling#93 · Filter by author hdashnow opened on Mar 24, 2021

• Full diploid genotypes for 2 short alleles

  enhancement
  quinlan-lab/STRling#91 · Filter by author seboyden opened on Mar 17, 2021
  1

• conda install error message (still installs)

  quinlan-lab/STRling#86 · Filter by author hdashnow opened on Feb 25, 2021
  1

• Support hemizygous calls in males on sex chromosomes

  enhancement
  quinlan-lab/STRling#62 · Filter by author hdashnow opened on May 14, 2020

• Need a more useful error for when bed file chromosomes don't match reference genome

  quinlan-lab/STRling#54 · Filter by author hdashnow opened on Mar 31, 2020

• Do some sensible filtering by default

  enhancement
  quinlan-lab/STRling#52 · Filter by author hdashnow opened on Mar 6, 2020

• STRling version number is in two places

  wontfix
  quinlan-lab/STRling#34 · Filter by author hdashnow opened on Dec 9, 2019

• Hide advanced parameters

  enhancement
  quinlan-lab/STRling#20 · Filter by author hdashnow opened on Oct 31, 2019

• Evaluate bounds soft-clip support using entropy

  enhancementlower priority
  quinlan-lab/STRling#12 · Filter by author hdashnow opened on Oct 22, 2019
  1

• Output VCF

  enhancement
  quinlan-lab/STRling#11 · Filter by author hdashnow opened on Oct 22, 2019
  3

• For cases where we are uncertain about the bounds, look at the reference genome sequence

  quinlan-lab/STRling#4 · Filter by author hdashnow opened on Jul 18, 2019