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docs(co-scientist): add the in-Platform surface for Cloud - #1826

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docs(co-scientist): add the in-Platform surface for Cloud#1826
justinegeffen wants to merge 4 commits into
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claude/magical-rubin-c25usx

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  • co-scientist/index.md — retitled Co-Scientist; reframed around two surfaces (the panel in Seqera Platform, and the CLI); separate get-started paths; states which capabilities are CLI-specific (skills, modes, command approval, Nextflow LSP).
  • NEW co-scientist/platform.md — "Co-Scientist in Seqera Platform": opening the panel, page context and what the screenshot captures, conversations and history, @ references, background execution, session file download.
  • co-scientist/projects.md — removed web-interface-specific framing; dropped the stale cli tag.
  • troubleshooting_and_faqs/seqera-ai.md — the project label and empty-state edge cases moved out of projects.md, which now links here.
  • cloud-sidebar.json — new page added as the first item under Co-Scientist.

🤖 Generated with Claude Code

https://claude.ai/code/session_013LzjiVweDfKC6JEFV9j4eW


Generated by Claude Code

The Co-Scientist section documented the CLI only. The Cloud index was
titled "Co-Scientist in Seqera CLI" and opened with "You interact with it
through the Seqera CLI", while Cloud now also ships a Co-Scientist panel
inside Seqera Platform. Customers starting a POC could not find the
surface they were being pointed at.

- Retitle the section "Co-Scientist" and frame it as two surfaces: the
  panel in Seqera Platform and the CLI, with separate get-started paths
  and a note on which capabilities are CLI-specific.
- Add "Co-Scientist in Seqera Platform" covering opening the panel, page
  context and what the screenshot captures, conversations and history,
  @-references, background execution, and session file download.
- Remove web-interface-specific framing from the projects page and move
  its edge cases to the Co-Scientist troubleshooting page.

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_013LzjiVweDfKC6JEFV9j4eW
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@justinegeffen justinegeffen added 1. Dev/PM/SME Needs a review by a Dev/PM/SME Approved in staging This has been approved in docs staging. do not merge Do not merge until this label is removed labels Sep 8, 2026
@justinegeffen justinegeffen added cloud release 3. Dev/PM/SME reviews complete SMEs have reviewed and approved. and removed 1. Dev/PM/SME Needs a review by a Dev/PM/SME labels Sep 8, 2026
- Fix duplicate `Page context` heading in platform.md; rename the nested
  one to `Screenshots`.
- Cut repeated statements of the two-surfaces fact across index.md and
  platform.md.
- Replace "surfaces" product jargon with plain wording.
- Terminology: "Nextflow workflows" -> "pipeline runs"; normalize
  "data link" -> "data-link" to match repo convention.
- Fix passive voice, an ambiguous pronoun, a decorative em-dash pair,
  and non-parallel list punctuation.
- Rename `Work your way` -> `Sessions, skills, and modes`.
- Troubleshooting: drop bold from the `No projects configured yet`
  heading (only bolded heading in the directory) and align the cause
  wording with the sibling entry.

Anchor changes (no inbound links found): #page-context-1, #work-your-way

Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
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3. Dev/PM/SME reviews complete SMEs have reviewed and approved. Approved in staging This has been approved in docs staging. cloud release deslop-done do not merge Do not merge until this label is removed

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