Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
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Updated
Sep 27, 2026
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
Non-parametric density inference for single-cell analysis.
Code and data accompanying "A live-cell image-based machine learning strategy for reducing variability in PSC differentiation systems", Cell Discov 9, 53 (2023).
Snapshot: a model-free method for clustering and visualizing epigenomic data
Can a cellular neural network learn how to reliably express meaningful patterns? This is a toy model for a gene regulatory network for cell specification.
This repository contains the code used for the project "Stochastic modeling of clonal memory effects on population growth of dividing and differentiating cells".
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