clades

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Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement

Renders SVG schema of SARS-CoV-2 clade as defined by Nextstrain

phylogenetics nextstrain sars-cov-2 clades

Yet Another TAxonomy Handler.

taxonomy clades

Flu clade and mutation frequencies

mutations influenza flu clades

A lightweight tool to find clusters of samples within a phylogeny

rust bioinformatics clustering phylogenetics bioconda clades

Code for calculating correlations between clade indicators.

This script allows to get Enterobacter cloacae complex hsp60 cluster from a multi-Fasta file

bioinformatics genomics clades enterobacter

Clades within clades of annotated labels: classify pplacer-type query placements by hierarchical reference clades

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